Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
UCEC rs1996650 chr4:57255073 T/C 0.00013 174 33.28 22.63 19.67 KM Plot
UCEC rs199944293 chr2:98346464 C/T 3.3E-13 171 22.8 20.17 2.4 KM Plot
UCEC rs200237461 chr9:95128071 C/CT 0 172 22.38 24.07 1.67 KM Plot
UCEC rs200442829 chr8:95488402 T/C 1.65E-8 173 23.18 20.7 11.37 KM Plot
UCEC rs2010167 chr15:84777000 C/T 4.97E-11 172 22.67 27.43 7.95 KM Plot
UCEC rs201087501 chr14:73551561 A/AT 5.37E-7 171 22.57 22.63 10.33 KM Plot
UCEC rs201154161 chr12:49295529 TTA/T 9.3E-6 170 11.37 22.97 22.75 KM Plot
UCEC rs201321182 chr3:48151105 AAAAT/A 6.91E-6 173 22.63 21.6 11.53 KM Plot
UCEC rs201609163 chr15:61000205 C/CT 1.1E-11 171 22.93 18.37 2.2 KM Plot
UCEC rs201793711 chr8:95488400 A/C 1.52E-8 172 23.77 21.07 11.37 KM Plot
UCEC rs201847965 chr13:100232942 T/A 7.64E-5 168 21.3 29.55 18 KM Plot
UCEC rs2024114 chr4:110842884 A/C 1.84E-5 168 21.6 25.47 19.1 KM Plot
UCEC rs2028429 chr8:95487517 A/T 1.39E-8 174 23.77 20.33 11.37 KM Plot
UCEC rs2048648 chr8:66626621 G/C 1.5E-11 171 4.33 22.7 22.63 KM Plot
UCEC rs2109301 chr7:157597927 G/C 3.7E-12 166 22.57 20.93 4.33 KM Plot